WASHINGTON (AP) — President Barack Obama has ordered the Pentagon to plan for a full American withdrawal from Afghanistan by the end of this year should the Afghan government refuse to sign a security agreement with the U.S, the White House said Tuesday.

However, in a call with Afghan President Hamid Karzai, Obama also said the U.S. could still keep a limited troop presence in Afghanistan after 2014 if the agreement is ultimately signed. He acknowledged that Karzai was unlikely to sign the bilateral security agreement himself, leaving the fate of the continued U.S. troop presence in Afghanistan to the winner of the country's April elections.

"We will leave open the possibility of concluding a BSA with Afghanistan later this year," the White House said in a summary of the call between the two leaders. However, the White House added that "the longer we go without a BSA, the more likely it will be that any post-2014 U.S. mission will be smaller in scale and ambition."

Tuesday's call was the first direct contact between Obama and Karzai since last June, underscoring the White House's frustration with the Afghan leader's refusal to sign the security agreement. The pact would give the U.S. a legal basis for having forces in Afghanistan after 2014, and also allow it to use bases across the country.

The White House has repeatedly said it would not leave American troops in Afghanistan without the agreement.

Defense Secretary Chuck Hagel called Obama's order to the Pentagon "a prudent step" given the likelihood that Karzai will not sign an agreement. However, he said the Pentagon would also continue to make plans for a possible U.S. mission in Afghanistan after this year, which would focus on counterterrorism and training Afghan security forces.

The Pentagon has long had contingency plans for multiple options in Afghanistan. However, Navy Rear Adm. John Kirby said Tuesday that until now, the military was "not actively planning for a complete withdrawal."

"Now we will," the Pentagon press secretary said.

Joint Chiefs Chairman Gen. Martin Dempsey was traveling to Afghanistan Thursday to visit U.S. military leaders in the country and assess the security situation. Dempsey said he continues to prefer keeping an American troop presence in the country because of the continued threat of al-Qaida, but said the options for doing so "are far more constrained than we're currently recommending."

Obama has been weighing options from the Pentagon that would keep as many as 10,000 troops in the country after this year, contingent on the security agreement. However, some White House officials are believed to support keeping a smaller troop presence.

The U.S. currently has about 33,600 troops in Afghanistan, down from a high of 100,000 in 2010.

The longer the decision takes, the more expensive and risky the troop drawdown will become. With less time to move troops and equipment, the military will have to fly assets out rather than use cheaper ground transportation.

If the security pact is never signed, the Pentagon's biggest challenge will be closing large military facilities, including the Bagram and Kandahar air bases. Shutting down a massive base typically it takes about 10 months, but military officials said they are prepared to do it in a much shorter — although far more expensive — period if necessary. Military officials said commanders would still like to have about six months to shut the facilities down. If there is no security agreement by late summer, the officials said closing the bases by the end of the year becomes far more difficult.